Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs11609235 chr12:133262922 C/G 8.98E-5 502 31.03 32.18 31.37 KM Plot
THCA rs116148205 chr21:47747848 G/C 8.67E-6 503 31.6 32.27 11.87 KM Plot
THCA rs116150720 chr3:97023388 A/G 5.11E-6 503 31.47 31.77 41.97 KM Plot
THCA rs11631171 chr15:85568535 T/G 6.24E-5 493 31.7 30.78 33.07 KM Plot
THCA rs116376896 chr18:13823643 C/A 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs116438954 chr16:79272960 A/G 4.35E-12 502 31.5 31.33 19.35 KM Plot
THCA rs116510005 chr5:1611425 T/G 8.5E-8 496 31.3 34.43 24.53 KM Plot
THCA rs116567806 chr11:123532789 G/A 1.64E-6 503 31.83 28.85 24.67 KM Plot
THCA rs11666224 chr19:49571399 T/G 6.36E-7 496 31.47 33.22 20.77 KM Plot
THCA rs11667411 chr19:49574247 G/A 1.38E-5 498 31.47 31.68 25.65 KM Plot
THCA rs11673003 chr19:49571957 A/G 6.18E-7 498 31.47 32.9 20.77 KM Plot
THCA rs116774851 chr5:178256077 G/A 2.81E-5 501 31.47 33.97 24.9 KM Plot
THCA rs116941441 chr7:44329431 C/T 0.000119 494 31.77 30.53 18.65 KM Plot
THCA rs116960249 chr16:79276940 G/T 0 494 31.5 32.27 5.8 KM Plot
THCA rs11696140 chr20:47240370 A/G 0 502 31.47 33.27 6.78 KM Plot